Test gene tree lineages for selection in a specie-tree aware context?
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2.1 years ago
Rijan ▴ 30

Are there frameworks for testing branch-site natural selection for lineages in gene trees against a backdrop of species trees? As in account for branches of a gene tree that belong to their respective species and see if selection has occurred on nodes leading up to those lineages or the lineages themselves?

I did a few rounds of googling but ended up with a few barely tangentially related hits, probably because there are too many technical terms in the query.

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