Copy Number analysis in 10X Visium data

Question

[kgiannikou]

Hello,

Has anyone used any inferCV for copy number analysis in 10X Visium data? 10X suggests copyKat but it does not appear accurate. The same for STARCH. Thank you

Answer 1

[oghzzang]

Hi, have you read this paper?

https://www.nature.com/articles/s41586-022-05023-2

I think they made an extended tool of inferCNV.