Do I need to run cmscan when analyzing small RNA sequences?
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24 months ago
Naemul ▴ 20

I need to filter out ncRNAs(rRNA,tRNA,snRNA,snoRNA) from my samples.

Do I really need to run cmscan, or run a bowtie to align?

My cmscan program has run for a very long time(nearly 48 hrs), it did not complete until now.

My samples are consist of 6 fasta files, each one has around 300 Mbases.

small RNA cmscan infernal • 342 views
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