Exon skipping AS pipeline

Question

[ta_awwad]

Dear All,

Is there any reliable pipeline that I can use to capture alternative splicing events, especially exon skipping in RNA-seq from two different tissues?

appreciate any recommendations/suggestions.

thanks a million

TA

[iraun]

Calling Exon Skipping Events from RNA-Seq

[ta_awwad]

Thanks much Iraun. I also found an R package for the same purpose. let me see if i get my analysis done without any troubleshooting. best. Tamer