heatplot not displaying all significant pathways
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Entering edit mode
2.1 years ago
emi ▴ 80

Hi,

I am wondering how the heatplot function in clusterProfiler decides how many pathways to display? I've performed enrichGO with the results below and plot heatplot using:

heatplot(module_GO, showCategory = 10,label_format = 10)

enter image description here

however, only 1 pathway was displayed although there are many pathways that is significant (padj<0.2) How can I make it plot all the sig pathways?

Thank you.

heatplot clusterProfiler • 381 views
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