Hi there! I got some bedgraph files from macs2 and converted them to wiggle and bigwig using scripts from UCSC. As far as I can understand changing the window size or binning is a way of lowering the resolution of the peaks from 1 bp to peaks coming from a sum of larger regions (correct me if I am wrong). My question is how i can change the window size of my files. Thanks in advance.
Thanks for replying Marco. Is there any way I can do that to peak file formats and not read alignments?
No, you need the .bam files, unfortunately.
Oook, got it! Thanks for the help Marco!