Entering edit mode
2.1 years ago
wyt1995
▴
40
Hi,
I often times have to do manual download by copying likes of every SRA dataset by hand and use fastq-dump. I want to download SRA RNA-seq data at ones, buy don't know how. Thanks in advance
--fastq-dump SRR12491510 --gzip --split-3
--fastq-dump SRR12491509 --gzip --split-3
...
--fastq-dump SRR12491506 --gzip --split-3
↓↓↓ want to change like
--fastq-dump SRR12491510 SRR12491509 ... SRR12491506 --gzip --split-3
Try parallel.
https://bioinformatics.stackexchange.com/a/13964/206