How to find out TSS and TTS from rice transcriptome data ?

How to find out TSS and TTS from rice transcriptome data ?

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2.1 years ago

isha.lily20 ▴ 10

Hello Researchers

How to find out TSS and TTS from rice transcriptome data ?

I have gtf file which contains only exons ?

Thank you

Transcriptome TSS TTS Rice • 553 views

ADD COMMENT • link updated 2.1 years ago by LChart 4.6k • written 2.1 years ago by isha.lily20 ▴ 10

1

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What is the source of your GTF? You can always filter Oryza out of Ensembl-plant (https://plants.ensembl.org/species.html) and obtain a full gff3 for the desired species.

ADD REPLY • link 2.1 years ago by LChart 4.6k

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