How to plot all enrichment plots from GSEA in one single plot in python or R?

Question

[Amr]

How to plot all enrichment plots for all gene sets from GSEA in one single plot in python or R?

After performing GSEA I got the report which has the enrichment plots but every enrichment plot is alone, I want to put all plots in one single plot, how can I do it and which data I need to use?

Thanks

[rpolicastro]

You need to post your code.

[Amr]

I am trying to use gseaplot(df, geneSetID=1) but I got that error

TypeError: gseaplot() missing 6 required positional arguments: 'term', 'hits', 'nes', 'pval', 'fdr', and 'RES'

Although in the document:

library(DOSE)
data(geneList)
x <- gseDO(geneList)
gseaplot(x, geneSetID=1)

Answer 1

[M.O.L.S]

Use the patchwork library to combine your plots. +