EBI ArrayExpress

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2.1 years ago

haiying.kong ▴ 360

Much changed with the database: https://www.ebi.ac.uk/biostudies/arrayexpress/studies

Now I cannot use the bioconductor package "ArrayExpress" for the database. It says:

> sets = queryAE(species="homo sapiens")
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
Error: XML content does not seem to be XML: ''

Also, if I try to filter mannually from the website, a lot information is missing, filtered out. For instance one project that I could get with the same filtering a week ago, now, I cannot get it. The filtering is totally counter helping.

Does anyone know what is going on here, and when they will fix this?

Thank you very much.

EBI database • 528 views

ADD COMMENT • link updated 12 months ago by sil_bioinfo ▴ 50 • written 2.1 years ago by haiying.kong ▴ 360