argv: Subscript out of range.

Question

[Neel]

Hi, I am using ksnp3 and it work earlier but now it didn't. Does anyone know anything about it?

./kSNP3 -in fasta_list -k 13 -outdir out1 -core -CPU 30 -NJ -vcf  -debug
Location of kSNP scripts: 
/home/bvs/ksnp/kSNP3
The home directory is /home/bvs/ksnp/kSNP3
argv: Subscript out of range.

Thank you!

[Istvan Albert]

edit the script (it is a bash script) and add

set -uex

after the first line

then you can see exactly where it fails.

Answer 1

[M.O.L.S]

It looks like the number 13 is too high (or low) . Do you have 13 of those k's?