How to generate pathway analysis report for a list of proteins

Question

[anasjamshed]

I have a list of genes in a text file and I want to create a pathway enrichment report by using python or R like this:

I tried Bio.KEGG module of python but did not get successful. Can anyone help me?

Answer 1

[Jean-Karim Heriche]

There are quite a few Bioconductor packages that can do pathway analysis (e.g. clusterProfiler to give just one), sometimes with overlapping features or targeting a specific use case or data type, just search a bit.
You may also be interested in these articles:

• Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap
• Nine quick tips for pathway enrichment analysis

[anasjamshed]

Is there any package exists in python similar like this>?