How to control width of my boxplots?
1
0
Entering edit mode
2.0 years ago

I wish to control the width of my boxes in box-and-whisker plots. Pleas help me to do

My Code:

library(tidyverse)
library(palmerpenguins)
library(ggplot2)
library(datasets)
library(RColorBrewer)
library(ggpubr)
library(DAAG)
library(nlme)
library(viridisLite)
library(ggbeeswarm)

expr <- read.delim("LUAD_BOX1.txt", stringsAsFactors = FALSE, header = TRUE)

ggplot(data = expr,aes(x = Type, y = TDRKH, fill = Type)) + stat_boxplot(geom = "errorbar", width=0.2) + geom_boxplot(width=0.5,outlier.shape=NA) + scale_fill_viridis_d(option = "D") + theme_pubr() + scale_fill_manual(values=c("green", "red")) + theme(text = element_text(size=16),plot.title = element_text(hjust = 0.5, face="bold", size=16), axis.title.y = element_text(size=16, face="bold", margin=margin(r=16)), axis.title.x = element_text(size=16, face="bold", margin=margin(t=16)), axis.text = element_text(size=16, face="bold", color="black"), legend.key.size = unit(2,"line"))+ theme(legend.text = element_text(size = 16)) + theme(legend.title = element_text(size = 16))

My Data:

       Sample            Type     TDRKH          Sex        Smoking Status
TCGA.38.4625.01A    Tumor   0.6500694   female  Reformed Smoker1
TCGA.38.4625.11A    Normal  -0.5658817  female  Normal
TCGA.38.4627.01A    Tumor   -0.5830916  female  Non-smoker
TCGA.38.4627.11A    Normal  -1.209234   female  Normal
TCGA.38.4632.01A    Tumor   1.146363    male    Reformed Smoker2
TCGA.38.4632.11A    Normal  -0.3336032  male    Normal
TCGA.44.2655.01A    Tumor   2.024474    female  Smoker
TCGA.44.2655.11A    Normal  -0.6665133  female  Normal
TCGA.44.2657.01A    Tumor   0.171917    female  Smoker
TCGA.44.2657.11A    Normal  -0.4269736  female  Normal
TCGA.44.2661.01A    Tumor   0.1126025   female  Non-smoker
TCGA.44.2661.11A    Normal  -0.7238899  female  Normal
TCGA.44.2662.01A    Tumor   1.273534    male    Smoker
TCGA.44.2662.11A    Normal  -0.6356711  male    Normal
TCGA.44.2665.01A    Tumor   0.009561531 female  Non-smoker
TCGA.44.2665.11A    Normal  -1.191961   female  Normal
TCGA.44.2668.01A    Tumor   0.9272611   male    Smoker
TCGA.44.2668.11A    Normal  -0.6641366  male    Normal
TCGA.44.3396.01A    Tumor   -0.1383681  female  Reformed Smoker1
TCGA.44.3396.11A    Normal  -0.8337708  female  Normal
TCGA.44.6145.01A    Tumor   1.290406    female  Smoker
TCGA.44.6145.11A    Normal  -0.7956443  female  Normal
TCGA.44.6147.01A    Tumor   0.6861114   female  Smoker
TCGA.44.6147.11A    Normal  -1.364572   female  Normal
TCGA.44.6776.01A    Tumor   0.3604824   female  Smoker
TCGA.44.6776.11A    Normal  -0.5145122  female  Normal
TCGA.44.6777.01A    Tumor   1.095746    female  Smoker
TCGA.44.6777.11A    Normal  -0.4956391  female  Normal
TCGA.44.6778.01A    Tumor   0.2749578   male    Smoker
TCGA.44.6778.11A    Normal  -0.9877578  male    Normal
TCGA.49.4490.01A    Tumor   0.03521947  female  Non-smoker
TCGA.49.4490.11A    Normal  -0.715968   female  Normal
TCGA.49.4512.01A    Tumor   1.154696    female  Non-smoker
TCGA.49.4512.11A    Normal  -0.4981203  female  Normal
TCGA.49.6743.01A    Tumor   1.403125    female  Non-smoker
TCGA.49.6743.11A    Normal  -0.9275845  female  Normal
TCGA.49.6744.01A    Tumor   0.300926    female  Non-smoker
TCGA.49.6744.11A    Normal  -0.9610111  female  Normal
TCGA.49.6745.01A    Tumor   0.228453    male    Non-smoker
TCGA.49.6745.11A    Normal  -0.801721   male    Normal
TCGA.49.6761.01A    Tumor   1.437622    female  Non-smoker
TCGA.49.6761.11A    Normal  -0.2979129  female  Normal
TCGA.50.5930.01A    Tumor   1.570507    male    Non-smoker
TCGA.50.5930.11A    Normal  -0.4416968  male    Normal
TCGA.50.5931.01A    Tumor   0.3775715   female  Non-smoker
TCGA.50.5931.11A    Normal  -0.6317542  female  Normal
TCGA.50.5932.01A    Tumor   1.211618    male    Non-smoker
TCGA.50.5932.11A    Normal  -0.7908115  male    Normal
TCGA.50.5933.01A    Tumor   1.576859    male    Non-smoker
TCGA.50.5933.11A    Normal  -1.06927    male    Normal
TCGA.50.5935.01A    Tumor   2.029953    female  Non-smoker
TCGA.50.5935.11A    Normal  -0.8517754  female  Normal
TCGA.50.5939.01A    Tumor   -0.1612658  male    Reformed Smoker2
TCGA.50.5939.11A    Normal  -0.7112667  male    Normal
TCGA.50.6595.01A    Tumor   -1.05404    female  Reformed Smoker2
TCGA.50.6595.11A    Normal  -0.5675514  female  Normal
TCGA.55.6968.01A    Tumor   1.025638    male    Non-smoker
TCGA.55.6968.11A    Normal  -0.2956288  male    Normal
TCGA.55.6970.01A    Tumor   0.8346801   female  Non-smoker
TCGA.55.6970.11A    Normal  -0.5011233  female  Normal
TCGA.55.6971.01A    Tumor   0.9952134   female  Smoker
TCGA.55.6971.11A    Normal  -0.4348784  female  Normal
TCGA.55.6972.01A    Tumor   1.663106    male    Non-smoker
TCGA.55.6972.11A    Normal  -1.005711   male    Normal
TCGA.55.6975.01A    Tumor   -0.08286432 male    Reformed Smoker2
TCGA.55.6975.11A    Normal  -0.3230795  male    Normal
TCGA.55.6978.01A    Tumor   -0.248721   male    Non-smoker
TCGA.55.6978.11A    Normal  -0.7937661  male    Normal
TCGA.55.6979.01A    Tumor   0.4372139   female  Non-smoker
TCGA.55.6979.11A    Normal  -0.737069   female  Normal
TCGA.55.6980.01A    Tumor   0.7107928   male    Non-smoker
TCGA.55.6980.11A    Normal  -0.6998034  male    Normal
TCGA.55.6981.01A    Tumor   0.7467579   female  Non-smoker
TCGA.55.6981.11A    Normal  -1.270066   female  Normal
TCGA.55.6982.01A    Tumor   0.2045792   female  Non-smoker
TCGA.55.6982.11A    Normal  -0.864682   female  Normal
TCGA.55.6984.01A    Tumor   -0.6147963  female  Non-smoker
TCGA.55.6984.11A    Normal  -0.9993112  female  Normal
TCGA.55.6985.01A    Tumor   0.2640623   female  Non-smoker
TCGA.55.6985.11A    Normal  -0.825988   female  Normal
TCGA.55.6986.01A    Tumor   0.161682    female  Non-smoker
TCGA.55.6986.11A    Normal  -1.345103   female  Normal
TCGA.73.4676.01A    Tumor   1.945119    male    Smoker
TCGA.73.4676.11A    Normal  -1.073368   male    Normal
TCGA.91.6828.01A    Tumor   1.327468    male    Reformed Smoker2
TCGA.91.6828.11A    Normal  -0.8411406  male    Normal
TCGA.91.6829.01A    Tumor   1.390523    male    Smoker
TCGA.91.6829.11A    Normal  -0.6558897  male    Normal
TCGA.91.6831.01A    Tumor   0.8284916   male    Non-smoker
TCGA.91.6831.11A    Normal  -1.071139   male    Normal
TCGA.91.6835.01A    Tumor   1.839444    female  Non-smoker
TCGA.91.6835.11A    Normal  -0.9248294  female  Normal
TCGA.91.6836.01A    Tumor   3.60664 female  Reformed Smoker1
TCGA.91.6836.11A    Normal  -0.05054061 female  Normal
TCGA.91.6847.01A    Tumor   0.9409349   female  Reformed Smoker2
TCGA.91.6847.11A    Normal  -0.8595158  female  Normal
TCGA.91.6849.01A    Tumor   1.131687    female  Smoker
TCGA.91.6849.11A    Normal  -1.165171   female  Normal

enter image description here

RNA-Seq Boxplot • 877 views
ADD COMMENT
2
Entering edit mode
2.0 years ago
seidel 11k

You're already doing that with the "width" option to geom_plot(width=somenumber). Do you want to control the width in some other way?

enter image description here

library(ggplot2)
library(gridExtra)
library(reshape2)

# create some data
df <- data.frame(x=rnorm(50), y=rnorm(50)+1)
# reshape for ggplot
df <- melt(df)

p1 <- ggplot(df, aes(x=variable, y=value)) + geom_boxplot()
p2 <- ggplot(df, aes(x=variable, y=value)) + geom_boxplot(width=0.2)

grid.arrange(p1, p2, nrow = 1)
ADD COMMENT
0
Entering edit mode

Thank you so much for your help.

ADD REPLY
0
Entering edit mode

A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they work. This will help future users that might find this post find the right answer.

upvote_bookmark_accept

ADD REPLY

Login before adding your answer.

Traffic: 2492 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6