Any way to search [GEO, etc] by library prep protocol (looking for published single-cell multi-ome data)?
0
0
Entering edit mode
2.1 years ago
mk ▴ 300

does anyone know if there is a way to search (eg GEO, zenodo, etc) for paired RNA/ATAC datasets like this one?

Ideally, there would be a way to search databases by library prep protocol. Here is the illumina multiome protocol that was used for the above data.

single-cell atac-seq rna-seq multiomics • 677 views
ADD COMMENT
0
Entering edit mode

mk : I corrected the link for Illumina multiome protocol PDF since the link you had contained strange characters. Please verify the link I included is correct.

Search https://sra-explorer.info/ with terms 10x multiome to find datasets you are looking for.

ADD REPLY

Login before adding your answer.

Traffic: 2143 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6