How to make a Dotplot like this in R for my clustered single cell data set

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2.0 years ago

paria ▴ 90

Hello all, I did my single cell analysis in Seurat. I would like to make a dot plot like the below one with dendrogram. Anybody knows how I can make this plot for my dataset. I would like it to visualize the expression of gene markers which I specify. This one is made using scanpy but I do work in R Seurat. I appreciate any help! Paria

enter image description here

data single DotPlot cell • 2.9k views

ADD COMMENT • link 2.0 years ago by paria ▴ 90

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You may find some hints here : https://davemcg.github.io/post/lets-plot-scrna-dotplots/

ADD REPLY • link 2.0 years ago by Basti ★ 2.0k

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Thank you! I am not sure how to create the scRNA_dotplot_data.tsv.gz needed for start of analysis. I appreciate it if you have done this and share the code with me. Paria

ADD REPLY • link 2.0 years ago by paria ▴ 90

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