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2.0 years ago
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I need to make a python program for
- Sequencing depth
- Read count
- Q30 percentage
- Average read quality score From a fastq file I did most but i keep getting stuck.. anyone help??
Let me tell you how your request reads to me. You want to reinvent the wheel, and want to do it using only plastic components. There are wheels out there, and there may be better ones, but you want to do it using plastic. You are not telling us why this is necessary. You are not providing any proof of your own effort to get this done. So you want someone to reinvent the wheel for you for unknown reasons and with no effort on your part. Did I get that right?
I think your chances of getting someone to help are slim no matter what. At least there would be a chance if you provided a compelling reason for doing this and showed a significant effort, where maybe someone can help push you over the hump.
Why not use already existing programs such as FastQC? You should also post a reproducible example of where you are getting stuck if you want people to help.