Download SraRunTable via entrez-direct
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2.0 years ago
gernophil ▴ 90

Hey everyone, I always downloaded the SraRunTable via the command line using this command: esearch -db sra -query {SRP number} | efetch -format runinfo

However, this does not have the same contents as the SraRunTable.txt that I can download from the SRA Run Selection. Is there a way to download this exact format via the command-line?

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SRA RunTable command line • 616 views
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I don't think so unless you want to parse the XML yourself after retrieving the data in that format.

You can alternatively download the data from the Run Browser though.

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