convert raw count to seurat object
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2.0 years ago
Rimanpreet • 0

I am trying to create a seurat object from raw.tsv.gz file, downloaded from GEOexpression (GSE158769). I tried to read it f1<-read.delim("GSE158769", stringsAsFactors=F, header=T) f1 f2<-createseuratobject(counts=f1) f2

It takes forever to open and read. I tried several times, please help me with this.

seurat • 596 views
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You should instead use fread from data.table.

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