Entering edit mode
2.0 years ago
ashenflower
▴
30
Hello everyone,
I need to compare different CNV callers before the segmentation step, and I would like for all of them to produce results on bins having the same size. For example, this is possible in Control-FREEC (using the window = xxx
parameter in the config file).
Is it possible to manually set a value for the bin size when using the -m wgs
option in CNVkit?
I tried to look evrywhere for it but I couldn't find it in the documentation (neither in other answers).
Thanks in advance!