Entering edit mode
2.1 years ago
Edmond
•
0
Hello,
I have created a pipeline following the best practices of GATK.
After that I have annotated the vcf fields with ANNOVAR, using the command table_annovar.pl
So fat so good until I checked the output, here it is the two columns belonging to AF and GT
As you can see I have a distribution of AF values and the genotype in letters. All I want to know if the variant is homocigotus or heterocygotus (sorry I dont know how it is spelled)
Furhtermore is any DB that gives us the inheritance mode? i.e dominant or recessive ?
