how to calculate BAF and LRR from bam or vcf file

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2.1 years ago

BioKeystone • 0

How can i calculate LRR and BAF from bam or vcf file for WGS data?

LRR BAF BAM VCF • 1.0k views

ADD COMMENT • link updated 2.0 years ago by 4galaxy77 2.9k • written 2.1 years ago by BioKeystone • 0

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Can you define those acronyms please.

ADD REPLY • link 2.1 years ago by 4galaxy77 2.9k

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BAF b allele frequency LRR log R ratio

ADD REPLY • link 2.0 years ago by BioKeystone • 0

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Need more details. There is no accepted definition of what a 'b allele' is - how are you defining it? And the log ratio for what?

ADD REPLY • link 2.0 years ago by 4galaxy77 2.9k

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