Entering edit mode
2.2 years ago
eaglesfeet
▴
20
I have been getting clusters that are expressing lineage markers such as: Cd19, Cd3, Cd4, Igha, Jchain.. etc. but those clusters did not have any Ptprc/ cd45 expression. Its 0. I was not able to find any papers including that type of situation. Do you have any suggestions about that? Are they immune cells? It is important to mention that I am working with cancerous cell population.
Thanks!
Could you be seeing something like this?
might be, this is so insightful thanks a lot.
Its a ptprc - dataset so there is 0 expression of it. Here is a dotplot from my UMAP so the markers are clear.