Any R package for pathway upstream regulator analysis?
1
0
Entering edit mode
2.0 years ago
weixiaokuan ▴ 140

Hi,

Does anyone know if there is a R package can perform analysis to identify upstream regulator of enriched pathway(s)?

I know IPA has such a function but I'd like to write my own code using open source R packages.

I know a few packages which can perform pathway analysis/enrichment very nicely but it seems lacking of upstream regulator analysis.

Thank you

-Xiaokuan

network-analysis Pathway-Analysis IPA • 1000 views
ADD COMMENT
0
Entering edit mode
2.0 years ago
alwayshope ▴ 40

https://maayanlab.cloud/Enrichr/enrich perhaps can have a try Enrichr

ADD COMMENT
0
Entering edit mode

thank you for your response @alwayshope. I took a look of Enrichr but it seems not having a function/model to identify upstream regulator. Instead, it seems only identify enriched pathways.

ADD REPLY

Login before adding your answer.

Traffic: 2065 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6