Normalizing Salmon output count data matrix using DESeq2

Question

[singcell]

I import counts and abundance matrix from Salmon output using tximport. I want to normalize the Salmon output count matrix using DESeq2 package. What code should I use to achieve this task? Can I do similar with Abundance output of Salmon?

Thank you

[ATpoint]

Read the DESeq2 manual which covers all that.

Answer 1

[ATpoint]

cross-posted and answered: https://support.bioconductor.org/p/9148559/