Entering edit mode
24 months ago
Sam
▴
150
Dear Biostars
I'm working on ceRNA network analysis, and I need to identify the miRNA response elements (mres) in the target genes of miRNAs
could you introduce me R library or web server for identification of mres? To have this data as output
Mirna Target energy gap_l gap_r
hsa-let-7b-5p RB1 -17.27 2085 2104
hsa-let-7b-5p RB1 -21.37 2482 2503
hsa-let-7b-5p SOX5 -31.33 640 662
hsa-let-7b-5p SOX5 -31.33 715 737
P.S this is one of input data for ceRNAseek library but in the manual no mentioned how they calculated this!