how to calculate dn/ds in PAML for large amounts of orthologous genes ?
0
0
Entering edit mode
2.1 years ago
▴ 20

I want to use the Codeml to calculate the Ka/Ks values for each pair of orthologous gene from two species. I have more than 10,000 pairs.

Could you tell me how I can run the Codeml? so I can calculate the Ka/Ks for the 10, 000 pairs of genes quickly (no need to analysis the genes one by one). Maybe, a script?

PAML • 417 views
ADD COMMENT

Login before adding your answer.

Traffic: 3005 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6