Use tximport to merge and transform the transcript counts to gene counts

Question

[anasjamshed]

I have this data:

And I want to convert this into gene counts. How can I do ?

[Ram]

How is creating a post here and not Googling the first thing you do? Unless you have a specific question and a track of what you've tried and where you're running into difficulties, please consider heavily before you create a new post.

[anasjamshed]

The data was obtained from salmon run on mouse RNAseq data

Answer 1

[bkleiboeker]

What have you tried so far? Googling the exact the title of this post took me to this vignette which looks like what you want to do: https://bioconductor.org/packages/devel/bioc/vignettes/tximport/inst/doc/tximport.html

[anasjamshed]

I also went through that tutorial but don't know how to proceed further

[bkleiboeker]

There's literally 2 whole sections for dealing with salmon output files. Unless you ask more specific questions I'm going to assume you are trolling and stop replying.

[anasjamshed]

I was just confused

[Ram]

You mention you'd tried something and were confused. When you create a post, mention what exactly you tried and where you stopped and why you stopped. When you try and write it out like that, you'll be able to solve the problem yourself a lot of the times.