Molecular dynamics simulation

Question

[manishamanu5198]

Can anyone guide me how to do molecular simulation. I have tried simulation work in gromacs in 310k temperature and 2ns. After MD simulation which pdb file can i take to recheck the docking interaction. I'm bit confusing!

[barslmn]

Can anyone guide me how to do molecular simulation.

Try YouTube: https://www.youtube.com/results?search_query=Molecular+dynamics+simulation

Or google: https://www.google.com/search?q=molecular+dynamics+simulation+introduction

I have tried simulation work in gromacs in 310k temperature and 2ns. After MD simulation which pdb file can i take to recheck the docking interaction.

Here is great post on how to ask a question: How To Ask Good Questions On Technical And Scientific Forums

I'm bit confusing!

It's okay to be confused. First try to understand fundamentals of what you're trying to do. Make sure you're going step by step and not jumping ahead. When you're confused go back a step and make sure you have a good understanding before moving on.