Processed RNA seq data publicly available
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23 months ago
Nemo • 0

Hi, I am doing a research work with pathway analysis. I need to download some RNA seq datasets. It would be great if they are already processed. I would be thankful if anybody can introduce RNA seq datasets.

RNA-seq • 1.2k views
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23 months ago
ATpoint 86k

BioJupies can do some simple analysis and (if you ignore all of the analysis as I do), at some point offers to download a count matrix and metadata, so that is "processed". It's a good resource to get these sorts of data.

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23 months ago

The recount project is also useful for yoinking uniformly processed stuff.

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23 months ago
Gordon Smyth ★ 7.7k

GEO is a huge repository of datasets, many of which are RNA-seq. All datasets provide processed data although the format is up to the depositer. My Lab always uploads count matrices, for example

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