Is there an alternative to InterPro search of Pfam *but for a query of nucleotides* ?

Question

[andrespara]

As the title says, with the exit of the Pfam site everything is migrating here https://www.ebi.ac.uk/interpro/search/sequence/

Unfortunately it seems we can't build a query of nucleotides against interpro. Besides a search in blastx where can I search a nucleotide against pfam or uniprot genes?
I am asking this because I already searched these nucleotide sequences and I am quite sure they match against some Pfam targets but I would like to send a few of these query sequences to a colleague in order he can check by himself in a website that these are an almost exact match with those families or motives.

Cheers,

Andrés

Answer 1

[Michael]

Galaxy has the InterproScan tool with an option to run from DNA sequences. The command line application certainly runs on nucleotide sequences.

The European instance has it: https://usegalaxy.eu/ usegalaxy.org doesn't have it installed but it's in the toolchain.