trans eqtl study for TWAS

Question

[rheab1230]

Hello everyone, I want to do TWAS analysis. But mostly TWAS focuses on cis eqtl. Is there any software which include both trans and cis eqtl. I know there is one software: Bayesian genome-wide TWAS (BGW-TWAS) Is there any other software apart from this? Is there any specific reason for not including trans eqtl in study apart from its distance? Thank you.

[Fabio Marroni]

matrix-eQTL can handle cis- and trans-eQTL