SetAllIdents and Idents function not found
1
0
Entering edit mode
23 months ago

Hello-- I am trying to perform DEG analysis-- differential expression between clusters in an scRNA-seq study. I am very new to MAST however, and when I tried to set the following:

seurat<- Idents(seurat, id = "CellType")

I get an error reading:

Error in Idents(suerat, id = "CellType"): could not find function "Idents". 

Any suggestions??

scrna-seq • 475 views
ADD COMMENT
0
Entering edit mode
23 months ago
Mensur Dlakic ★ 28k

I did a Google search and the answer is there. Chances are that your Seurat version is too old.

ADD COMMENT

Login before adding your answer.

Traffic: 991 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6