De novo motif in DNA sequences

Question

[Martina]

Hi everyone, I would like to find (if present) the novo motifs on a large set of DNA sequences. I would provide a fasta file with sequences, and a bed file with the coordinates where to find the motifs. Any suggestion about any software to use?

The dataset of sequence is large.

Thank you all!

Answer 1

[Buffo]

The MEME Suite can be a good start for you.