Using DANPOS2 to determine nucleosome positions
0
0
Entering edit mode
23 months ago
elisheva ▴ 120

Hi everyone. I want to determine the nucleosome positions from ENCODE data (ENCFF000VME).
The file is a signal file in Bigwig format - so there is no way to find the positions by just looking at the file.
I found that some people use the DANPOS2 in order to find the nucleosome positions from MNase-seq data.
However it's still unclear to me which option to use given the Bigwig format and how, and also how to verify the results.

MNase-seq DANPOS ENCODE bigwig • 502 views
ADD COMMENT

Login before adding your answer.

Traffic: 1564 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6