Code for cuffdiff, NIOSeq, bayseq to perform DEG analysis

Question

[rupali]

Code to find DEGs with help of using these bioconductor packages

Answer 1

[jv]

• NOISeq https://www.bioconductor.org/packages/release/bioc/vignettes/NOISeq/inst/doc/NOISeq.pdf
• Cuffdiff http://cole-trapnell-lab.github.io/cufflinks/manual/
• Bayeseq https://bioconductor.org/packages/release/bioc/vignettes/baySeq/inst/doc/baySeq.pdf

Read through the above user documentation and give things a try. You are not likely to get much help here if you don't ask more specific questions Tutorial:How To Ask Good Questions On Technical And Scientific Forums

[rupali]

okay i am new to use this so getting such difficulties.