Visualization of Enrichment score for spatial 10x visium samples

Question

[Omics data mining]

Hello everyone

I have done spatial transcritpome analysis in seurat and identified clusters of interest. Next identified gene enrichment scores for set of features which gives value for each spot. I would like to display score at spot level as shown in figure 4D in following publication : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8494229/

I would appreciate all the suggestions

Thanks in advance

Answer 1

[Nicolas Rosewick]

You can easily do this type of plot using SpatialFeaturePlot from Seurat

[Omics data mining]

Thanks. It worked.