Splicing factor database

Question

[dvanic]

Hi All,

I need a list of human/mouse splicing factors - what databases that are not abandonware do you use?

Thanks in advance!

PS I've found:

• SpliceAid 2: a database of human splicing factors expression data and RNA target motifs, which has 71 SF and was last updated in 2013 http://193.206.120.249/splicing_tissue.html
• SpliceFac, which seems to be abandonware http://rulai.cshl.edu/cgi-bin/SpliceFac/splicefac.cgi?process=home
• SpliceAid F which was published in 2013 and is already broken http://www.caspur.it/SpliceAidF/

[Eric Lim]

Not all RBP involve in splicing, but https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3929597/ might be helpful. While it might a few years old, it's a pretty comprehensive study.

[pengchy]

RBPDB: http://rbpdb.ccbr.utoronto.ca

[Ömer An]

None of the links work. Any other suggestions?

[yangb]

Is there any new splicing factor database? Seem like there is not much update.

Answer 1

[gianluca.dellavedova]

Shameless plug: Would ASPicDB fit your need?

[dvanic]

Sorry if I wasn't clear (or I'm not finding the right link) - I need a list of things that work as splicing factors, not a tool to predict transcripts that could potentially be spliced?

Answer 2

[angel.rubio.diaz]

SpliceAid F is in http://srv00.ibbe.cnr.it/SpliceAidF/