use cutadapt to trim bases at begaining of each reads
1
0
Entering edit mode
21 months ago

Here is the QC report with Per base sequence content. Do I need to trim the 1st 15 bases when using cutadapt? enter image description here

trimming adapter bases cutadapt • 744 views
ADD COMMENT
1
Entering edit mode
21 months ago
GenoMax 147k

You should not need to trim the bases. See this blog post: https://sequencing.qcfail.com/articles/positional-sequence-bias-in-random-primed-libraries/

ADD COMMENT
0
Entering edit mode

Thank you!

ADD REPLY

Login before adding your answer.

Traffic: 2065 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6