Downloading required resources for VQSR

Question

[Yoosef]

Hello

During VQSR, we need to introduce files with known mutations and variants to train the machine. Can you please tell me the website that I can download following file for this purpose?

1000G omni- indel/SNP
hapmap hg19 
dbsnp_138
CEUTrio.Hiseq.WGS

Answer 1

[Pierre Lindenbaum]

https://gatk.broadinstitute.org/hc/en-us/articles/360035890811-Resource-bundle

The resource bundle is hosted on a Google Cloud bucket. This bucket is useful for people who plan to run analyses on the Google Cloud, and can therefore call to the resource files directly using the bucket paths, without needing to copy or download the files first. These files can also be directly downloaded from the cloud for processing on your local machine. ​ The bucket can be accessed using a regular web browser at the following Google Cloud Platform site : https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0/

[Yoosef]

Thanks a lot . Can you please send the link for hg19 data too?

[Yoosef]

Hello again I have tried two times to download these files. However, after downloading for a few minutes, it stops and asks authentication to continue the download. Do you know what is the best way to download these files? Do you know the password it requires?