PLINK ped file

Question

[loy_loy]

Hi everyone,

I am trying to run a PLINK analysis with GWAS summary stats. I want to filter the data to get a selection of lead SNPs and use the --clump function of PLINK. I converted the data to map format, but I am missing information to create a ped file that is required by PLINK to create the binary files.

How do I get the information or fill a suitable ped file for the analysis?

Many thanks!

[Fabio Marroni]

There's documentation on the web.

This can be a good start. This tutorial can also be useful.