error while submitting a Rscript job through slurm

Question

[rheab1230]

Hello

I have a R script which I am submitting through slurm. This R script it loop through 2150 genes across 31 tissues and create a output table which stores whether for a particular gene I am getting gene model for it across all the tissues. I submitted this job through slurm but it run for 1 day and then throw an error.

This the error I am getting:

Error in write.table(models_df, file = paste0(genes_union[k], ".txt"),  :
  Error writing to connection:  No space left on device
Execution halted

Does anyone know how to deal with this error. I also have cut the main job into many small job to loop through less genes.

Thank you

Answer 1

[Ram]

You're either over your allocated disk space on the cluster or your TMP directory is full - it's probably the former. Contact your sysadmin.