Entering edit mode
22 months ago
martta95
▴
10
Hello,
I have list of transcript mapped to Hordeum vulgare genome, eg:
HORVU.MOREX.r2.UnG0628590.1
HORVU.MOREX.r2.5HG0361000.1
HORVU.MOREX.r2.UnG0628880.1
HORVU.MOREX.r2.UnG0634500.1
HORVU.MOREX.r2.UnG0633590.1
HORVU.MOREX.r2.6HG0466780.1
HORVU.MOREX.r2.UnG0635240.1
HORVU.MOREX.r2.UnG0634160.1
HORVU.MOREX.r2.UnG0634110.1
HORVU.MOREX.r2.1HG0022820.1
HORVU.MOREX.r2.UnG0628630.1
HORVU.MOREX.r2.2HG0159250.1
HORVU.MOREX.r2.7HG0559940.1
HORVU.MOREX.r2.1HG0030360.1
HORVU.MOREX.r2.1HG0074980.1
HORVU.MOREX.r2.5HG0417680.1
HORVU.MOREX.r2.2HG0172880.1
I would like to annotation about gene names, function, and protein that encode e.g.,
HORVU.MOREX.r2.1HG0022820.1,Hordeum vulgare subsp. vulgare 5.8S ribosomal RNA (LOC123422461), F2ECJ1, Predicted protein GO:0000166, nucleotide binding
What tool can I use?
A simple solution would be to get the Hordeum GFF file from Ensembl here. Column 9 in the file has most of the info you are looking for except perhaps the GO categories.