Hello everyone,
I am currently working on a project where I need to analyze inter chromosomal interactions data with count frequency similar to the ones mentioned in this paper (https://www.nature.com/articles/nature08973#Sec3). I have attached an image below as an example of the interactions I am looking for.
However, I am not sure how to use HiC data to obtain this information. I have searched extensively on the GEO website but have not been able to find the relevant data for the Saccharomyces family but not Saccharomyces cerevisiae because I already have it.
Can anyone please suggest any databases that include this information for different organisms, particularly the Saccharomyces family? Also, any guidance on how to analyze HiC data to obtain inter chromosomal interactions with count frequency would be highly appreciated.
Thank you in advance for your help.
