Entering edit mode
22 months ago
alwayshope
▴
40
Dear guys,
Below is the ATAC seq counts by featureCounts, Is it good or not so good? As the assigned are much less than unassigned...
Thanks a lot!
Assigned 944998
Unassigned_Unmapped 0
Unassigned_Read_Type 0
Unassigned_Singleton 0
Unassigned_MappingQuality 0
Unassigned_Chimera 0
Unassigned_FragmentLength 0
Unassigned_Duplicate 0
Unassigned_MultiMapping 14625782
Unassigned_Secondary 0
Unassigned_NonSplit 0
Unassigned_NoFeatures 51415276
Unassigned_Overlapping_Length 0
Unassigned_Ambiguity 250
I've seen better, lets say it like this. Lots of unassigned reads, can indicate lots of noise. Check on a genome browser how data look, then you know.