is this good atac seq counts
0
0
Entering edit mode
22 months ago
alwayshope ▴ 40

Dear guys,

Below is the ATAC seq counts by featureCounts, Is it good or not so good? As the assigned are much less than unassigned...

Thanks a lot!

Assigned        944998
Unassigned_Unmapped     0
Unassigned_Read_Type    0
Unassigned_Singleton    0
Unassigned_MappingQuality       0
Unassigned_Chimera      0
Unassigned_FragmentLength       0
Unassigned_Duplicate    0
Unassigned_MultiMapping 14625782
Unassigned_Secondary    0
Unassigned_NonSplit     0
Unassigned_NoFeatures   51415276
Unassigned_Overlapping_Length   0
Unassigned_Ambiguity    250
ATAC-seq • 523 views
ADD COMMENT
2
Entering edit mode

I've seen better, lets say it like this. Lots of unassigned reads, can indicate lots of noise. Check on a genome browser how data look, then you know.

ADD REPLY

Login before adding your answer.

Traffic: 2034 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6