Hello! I am trying to run admixture with the command line admixture --cv all_cg_gersamples.bed 2
It aborts with the following output.
Please what am I getting wrong?
ADMIXTURE Version 1.3.0
Copyright 2008-2015
David Alexander, Suyash Shringarpure,
John Novembre, Ken Lange
Please cite our paper! Information at www.genetics.ucla.edu/software/admixture
Cross-validation will be performed. Folds=5. Random seed: 43 Point estimation method: Block relaxation algorithm Convergence acceleration algorithm: QuasiNewton, 3 secant conditions Point estimation will terminate when objective function delta < 0.0001 Estimation of standard errors disabled; will compute point estimates only. zsh: abort admixture --cv all_cg_gersamples.bed 2
Did you try to run admixture with the sample file that should be distributed with the software? Did that abort as well?