how best to analyze vcf files

Question

[Mali]

I have more than 200 vcf and my task is to search for identical SNPs I can do it in python or R what the best way to start ?

[barslmn]

If you're looking for variants shared over multiple samples, you can check out bcftools isec command.

[iraun]

There are multiple ways of doing this and probably you could find many similar posts in the forum, such as Intersect multiple VCF files