Snakemake error to build synteny from BUSCO .tsv

Question

[Diego]

Hi,

I am trying to run (on CAMP) protocol 2 (https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpz1.323) of BUSCO with test data, but I am getting this error:

[diego@login001 plot_syntenies]$ snakemake -core 2 --use-conda --jobs 1
Building DAG of jobs...
MissingRuleException:
No rule to produce 2 (if you use input functions make sure that they don't raise unexpected exceptions).

Has anyone faced this problem??

Answer 1

[raphael.B]

I don't know BUSCO, but the correct command for snakemake would be this snakemake --cores 2 --use-conda --jobs 1