Entering edit mode
20 months ago
anasjamshed
▴
140
Can anyone provide me with some bam or sam bismark files to run methylKit on it?
I want to execute processBismarkAln()
Thanks. How can I use it?
I do not understand your question, I provided the code to test processBismarkAln with a sam test file
but where are these files?
In methylKit package, in the extdata folder as I provided an example of sam file with my code :
Complete list of all test datasets available for this package can be shown with :
ok. I tried and get this error:
This is not an error message
ok, but my question is when I try to run my own file, it gives me an error:
Why I get this error?