How to calculate the Z value of infernal cmscan?
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2.0 years ago

The infernal Userguide says(link) enter image description here But the website of Rfam Help says(link) enter image description here Which is correct？If the infernal Userguide is correct, the number of CMs is 4108, am I right? enter image description here And I also want to know what would happen if I run cmscan without use this option. Thanks!
cmscan ncRNA infernal • 937 views
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2.0 years ago
Dunois ★ 2.9k

Please see this discussion regarding the -Z switch:How to choose between --cut_ga, --cut_tc, and --cut_nc in hmmsearch? (hmmer).
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I misunderstand.

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