known-sites for Felis_catus_9.0 (GCA_000181335.4)

Question

[makarov]

Good afternoon dear members,

I am processing Cat WGS samples and running gatk BaseRecalibrator and one of the required parameters is --known-sites - One or more databases of known polymorphic sites used to exclude regions around known polymorphisms from analysis.

Does anyone know where I can find a VCF file similar to those in GATK resources bundle available for humans?

Thank you

Answer 1

[Pierre Lindenbaum]

https://ftp.ensembl.org/pub/release-109/variation/gvf/felis_catus/

[makarov]

Thank you, I also found vcf files https://ftp.ensembl.org/pub/release-109/variation/vcf/felis_catus/